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Statistical tests and power analysis for three in-vivo bioassays to determine the quality of marine sediments.
Nelly van der Hoeven1*, Belinda J. Kater2§ and Jan F. Pieters2.
-
ECOSTAT, Vondellaan 23, 2332 AA, Leiden, The Netherlands
- National Institute for Coastal and Marine Management, Field station, Jacobaweg 2, 4493 MX Kamperland, The Netherlands
§: Present address: RIVO - Centre for Shellfish Research, P.O. box 77, 4400 AB Yerseke, The Netherlands
* Corresponding Author:
Nelly van der Hoeven,
ECOSTAT,
Vondellaan 23,
2332 AA Leiden,
The Netherlands
tel.: (+)31-(0)71-5315011; fax: (+)31-(0)842-116988;
email:
Summary
Statistical tests are recommended for three marine sediment in-vivo bioassays. In two bioassays (Corophium volutator and Echinocardium cordatum), the mortality in the sediment is compared with that in a control. An unconditional 2×2 test is recommended. For one bioassay (Rotoxkit M™ with Brachionus plicatilis), mortality in a dilution
series of pore water is compared with the mortality in a control. The Williams' test for trends is recommended.
For each of these tests the power to assess an effect has been calculated. The number of replicates recommended in the standardized test protocol only allow to observe large effects in almost all (95%) of the experiments. Given the control mortality rates estimated from a large set of controls, a power of 95% will only be reached if the mortality
rate in the tested sediment is over 30% for C. volutator and almost 60% for E. cordatum. To reach this power for bioassays with B. plicatilis, where 5 concentrations are compared with a control, the mortality rate in the Lowest Effect Concentration should be about 35%.
As alternative to no effect testing, it is suggested to test whether the effect of a treatment remains below some chosen minimal relevant effect (MRE). Given an MRE at a fixed mortality rate of 25% and α=0.05, at least 55 individuals are necessary to be reasonable sure (95%) that a mortality of 10% will not be declared toxic incorrectly.
The tests for mortality are based on the assumption that survival of individuals within a test vessel are independent. We have described a method to test this assumption and applied it to the data on C. volutator.
keywords: NOEC; ECx; Williams' test; Cochran-Armitage Trend test; Unconditional 2×2 test
Environmetrics 13: 281-293, 2002
Een selectie uit de publikaties van Nelly van der
Hoeven
Is it safe to pool the Blank Control Data with the Solvent Control data? N. van der Hoeven,
Ecotoxicol. Environm. Safety, 73:1480-1483, 2010
Multi-criteria decision analysis of test endpoints for detecting the effects of endocrine active substances in fish full life cycle tests.
M. Crane, M. Gross, P. Matthiessen, G.T. Ankley, S. Axford, P. Bjerregaard, R. Brown, P. Chapman, M. Dorgeloh, M. Galay-Burgos, J. Green, C. Hazlerigg, J. Janssen, K. Lorenzen, J. Parrott, H. Rufli, C. Schäfers, M. Seki, H.C. Stolzenberg, N. van der Hoeven, D. Vethaak, IJ. Winfield, S. Zok & J. Wheeler
Integr Environ Assess Manag., 6: 378-389, 2010
Exposure analysis of bisphenol A in surface water systems in North America and Europe. (PMID:19746705)
G.M. Klecka, C.A. Staples, K.E. Clark, N. van der Hoeven, D.E. Thomas & S.G. Hentges
Environmental Science & Technology, 43: 6145-6150, 2009
The Minimum Significant Difference at the NOEC calculated with a non-parametric test.
Hoeven, N. van der,
In: Proceedings of the 30th Anniversary Meeting of the Netherlands Society of Toxicology, june 2009. p. 122
Calculation of the Minimum Significant Difference at the NOEC using a non-parametric test.
Hoeven, N. van der,
Ecotoxicol. Environm. Safety, 70: 61-66, 2008
Does bisphenol a induce superfeminization in Marisa cornuarietis?
Part I: Intra- and inter-laboratory variability in test endpoints. Forbes, V.E., H. Selck, A. Palmqvist, J. Aufderheide, R. Warbritton, N. Pounds, R. Thompson, N. van der Hoeven & N. Caspers
Ecotoxicol. Environm. Safety, 66: 309-318, 2007
Does bisphenol A induce superfeminization in Marisa cornuarietis?
Part II: Toxicity test results and requirements for statistical
power analyses. Forbes, V.E., J. Aufderheide, R. Warbritton, N. van der Hoeven & N. Caspers
Ecotoxicol. Environm. Safety, 66: 319-325, 2007
Statistical issues in fish life-cycle tests with many endpoints.
Hoeven, N. van der & D.R. Dietrich,
Abstract and poster for SETAC Europe, May 2005, Lille
The probability to select the correct model using likelihood-ratio based criteria in choosing between two nested models of which the more extended one is true.
Hoeven, N. van der,
Journal of Statistical Planning and Inference, 135: 477-486, 2005
Effects of bisphenol A on adult fathead minnow (P. promelas) gonadal histology: a 42-day exposure study.
Dietrich, D.R., J. Wolf, A.R. Brown, J.E. Caunter, N. van der Hoeven & U. Friederich,
Abstract and poster for the Cluster workshop on Ecological relevance of chemically induced endocrine disruption in wildlife. University of Exeter, july 2004.
The Netherlands working group on Statistics and Ecotoxicology: Statistics and Models for Risk Assessment.
Hoeven, N. van der,
In: Proceedings of the Jubilee Annual Meeting of the Netherlands Society of Toxicology, june 2004. p. 114
Current issues in statistics and models for Ecotoxicological Risk Assessment.
Hoeven, N. van der,
Acta Biotheoretica 52: 201-217, 2004
Balancing statistics and ecology: on the lumping of experimental data for model selection.
Hoeven, N. van der, L. Hemerik & P.A. Jansen. In: T.A.C. Reydon & L. Hemerik (Eds): Current themes in Theoretical Biology: A Dutch Perspective. pp 233-265. Springer, Dordrecht, The Netherlands, 2004.
Using marine bioassays to classify the toxicity of Dutch harbour sediments. Stronkhorst, J., C. Schipper, J. Brils, M. Dubbeldam, J. Postma & N. van der Hoeven
Environmental Toxicology and Chemistry, 22: 1535-1547, 2003
What can egg distributions of solitary parasitoids tell us about the information the parasitoid has and uses for its oviposition decisions? Hemerik, L.,N. van der Hoeven &
J. J.M. van Alphen, Acta Biotheoretica, 50: 167-188, 2002
Statistical tests and power analysis for three in-vivo bioassays
to determine the quality of marine sediments. Hoeven, N. van der, B. J. Kater &
J. F. Pieters, Environmetrics 13: 281-293, 2002
Significance tables for the exact variance test for the Poisson
distribution with alternative underdispersion. N. van der Hoeven & L Hemerik,
Environmental and Ecological Statistics 9: 201-213, 2002
Estimating the 5-percentile of the species sensitivity
distribution without any assumptions about the distribution. N. van der Hoeven,
Ecotoxicology 10: 25-34, 2001
Power analysis for the NOEC: What is the probability to detect
small toxic effects on three different species using the appropriate standardized test
protocols? N. van der Hoeven, Ecotoxicology 7: 355-361, 1998
The acute toxicity of selected alkylphenols on young and adult
Daphnia magna. A.A.M. Gerritsen, N. van der Hoeven & A. Pielaat,
Ecotoxicol. Environm. Safety 39: 227-232. 1998
The ecotoxicity and the biodegradability of lactic acid, alkyl
lactate esters and lactic acid salts. C.T. Bowmer, R.N. Hooftman, A.O. Hanstveit,
P.W.M. Venderbosch & N. van der Hoeven, Chemosphere 37:
1317-1333, 1998
How to measure no effect? Part I: Towards a new measure of
chronic toxicity in ecotoxicology. Introduction and workshop results. N. van der Hoeven,
F. Noppert & A. Leopold, Environmetrics 8: 241-248, 1997
How to measure no effect? Part III: Statistical aspects of
NOEC, ECx and NEC estimates. N. van der Hoeven, Environmetrics 8: 255-261, 1997
The effect of chlorpyrifos on individuals of Daphnia
pulex in laboratory and field. N. van der Hoeven & A.A.M. Gerritsen,
Environm. Toxicol. Chem. 16: 2438-2447, 1997
A model based on soil structural aspects describing the fate of
genetically modified bacteria in soil. N. van der Hoeven & J.D. van Elsas,
Ecological Modelling 89: 161-173, 1996
Competition between cohorts of juvenile Daphnia
magna. E.L. Enserink, N. van der Hoeven, M. Smith, M. van der Klis & M.A.
van der Gaag, Archiv für Hydrobiologie 136: 433-454, 1996
Reliability of quantitative toxicity test results: from
experimental control to data processing. Enserink, E.L. & N. van der Hoeven,
The Science of the Total Environment, suppl. 1993, Proceedings of the Second
European Conference on Ecotoxicology, eds. W. Slooff & H. de Kruijf, p. 699-704,
1993
LC50 estimates and their confidence intervals. The case that
only one test concentration has partial effect. N. van der Hoeven, Water
Research 25: 401-408, 1991
Effects of toxicants on individuals and populations of Daphnia,
a simulation study. N. van der Hoeven, Comparative Biochemistry and
Physiology 100C: 283-286, 1991
Effect of 3,4-dichloroaniline and metavanadate on Daphnia
populations. N. van der Hoeven, Ecotoxicology and Environmental Safety
20: 53-70, 1990
Salmonella test: Relation between mutagenicity and number of
revertant colonies. N. van der Hoeven, S.A.L.M. Kooijman & W.K. de Raat,
Mutation Research 234: 289-302, 1990
Superparasitism as an ESS: to reject or not to reject, that is
the question. N. van der Hoeven & L. Hemerik, J. of Theoretical Biology
146: 467-482, 1990
Population consequences of a physiological model for individual
development S.A.L.M. Kooijman, N. van der Hoeven & D.C. van der Werf,
Functional Ecology 3: 325-336, 1989
Oscillations in Daphnia populations. N. van der
Hoeven, A.M. de Roos & S.A.L.M. Kooijman, Econieuws 2, 7-8,
1989
The population dynamics of Daphnia at constant food supply: a
review, re-evaluation and analysis of experimental series from the literature. N. van
der Hoeven, Netherlands Journal of Zoology 39: 126-155, 1989
Random elements in a population model based on individual
development. N. van der Hoeven, in: Ecodynamics, Proc. Int. Workshop at Jülich,
FRG, 19-20 Oct. 1987. Eds. W. Wolff, C.J. Soeder & F.R. Drepper, pp 333-342,
Research Notes in Physics, Springer Verlag., 1988
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